PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462848079
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 507aa    MW: 55935 Da    PI: 4.5574
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462848079genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.27.2e-35371282102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++e+++d+++++++sw   +nsfvv+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i+
     462848079  37 FLMKTHEMVDDPATDDIVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKTIN 124
                   9*********************99*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     462848079 125 RRKP 128
                   *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.8E-3931121IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.17E-3533126IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-6133126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-193760IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.2E-3137126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-1988100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MEGGVAAAAA APAXXXXXXX XXXXXXXXPP TAPPPPFLMK THEMVDDPAT DDIVSWGPGN  60
NSFVVWNTPE FARDLLPKYF KHSNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGQKHLL  120
KTINRRKPSL QGNSQPQQPQ LQNAPVPACV EVGKFGLEEE IERLKRDKNV LMQELVRLRQ  180
QQQTTDHQLQ TLGKRLQGME SRQQQMMSFL AKAMQSPGFL AQFVQQNENS RRRIVAVNKK  240
RRLPKQDGGL DSESASLDGQ IIKYQPMINE AAKAMLRKIL NQDTSHRFEA VGNSDNFLLD  300
NYMPAAQGFD SSSSTRNSGV TLAEVPANSG LPYIATSSGL STICSSSATP EMQCPVVLDN  360
NSSKQVPDMS AGPPVPPVPK PITPGPSDIS IPEFSDLQDI VTDDSVDIPG GSFDIPGPEG  420
VFPLPEEGDD SVPIETDEMM YNDETQKLPG IIDSFWEQFL VASPISGDND EVDSGALETP  480
QENGWNKMEN LANLTEQMGL LSSNHKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-253513018124Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466076.10.0hypothetical protein SORBIDRAFT_01g000730
SwissprotQ84T610.0HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A0E0KLP90.0A0A0E0KLP9_ORYPU; Uncharacterized protein
STRINGORGLA03G0383200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50973151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-118heat shock factor 3